In order to be protected, biodiversity must be evaluated. For cyanobacteria, the traditional morphological measures of biodiversity are unsatisfactory.
We utilize molecular markers (like SSU rRNA) to define taxa on the basis of phylogeny. In freshwater ecosystems huge populations of cyanobacteria can occur. These blooms may release toxins that make the water poisonous. A second part of the study is to compare the temporal dynamics of biodiversity in both natural and disturbed lakes. This comparative analysis requires the use of ecological indexes to summarise the diversity of the samples and allow inferences about the ecosystem to be made.
Further information:
https://cordis.europa.eu/result/rcn/32069_en.html
Design and testing of dna microarrays to monitor microbial diversity with adequate biodiversity indexes, using cyanobacteria in freshwater as a model system
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 2
contact name:
contact orcid:
contact position:
contact email:
Kaarina.Sivonen@helsinki.fi
contact institute:
University of Helsinki
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 3
contact name:
contact orcid:
contact position:
contact email:
gianluca.debellis@itb.cnr.it
contact institute:
CNR-ITB
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 4
contact name:
contact orcid:
contact position:
contact email:
pirjo.kuuppo@ymparisto.fi
contact institute:
Finnish Environment Institute
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 5
contact name:
contact orcid:
contact position:
contact email:
stefano.ventura@ise.cnr.it
contact institute:
CNR-ISE
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 6
contact name:
contact orcid:
contact position:
contact email:
b.montanari@unica-spa.it
contact institute:
Hera S.p.A.
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 7
contact name:
contact orcid:
contact position:
contact email:
peter@irchouse.demon.co.uk
contact institute:
PISCES Conservation Ltd
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 8
contact name:
contact orcid:
contact position:
contact email:
hoffmann@crpgl.lu
contact institute:
CRP-Gabriel Lippmann
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 9
contact name:
contact orcid:
contact position:
contact email:
Komarek@butbn.cas.cz
contact institute:
University of South Bohemia
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
data contributor/owner 10
contact name:
contact orcid:
contact position:
contact email:
mzal@biol.uni.lodz.pl
contact institute:
University of Lodz
contact country:
criteria for using this part of the dataset:
The dataset is publicly available (data portal, data archive) and can be used without restrictions, but dataset creator/data contributors must be informed prior to publication. Data must be acknowledged and cited correctly.
citation of this dataset:
author(s):
Lara, Y., Wilmotte, A., Boutte, C., Grubisic, S., Balthasart, P., De Bellis, G., Castiglioni, B., Rizzi, E., Frosini, A., Sivonen, K., Rajaniemi, P., Rantala, A., Kuuppo, P., Lepistö, L., Ventura, S., Mugnai, M.A., Turichia, S., Tedioli, G., Henderson, P., Seaby, R., Hoffmann, L., Willame, R., Komarek, J., Komárková, J., Hrouzek, P., Zalewski, M., Tarczynska, M., Mankiewicz, J., Zydorczyk, K. & Jurczak, T.
title and journal (name, number, pages):
MIcrobial DIversity CHIP database
citation of the metadata:
author(s):
Lara Y., Wilmotte A., Sivonen K., De Bellis G., Kuuppo P., Ventura S., Montarani B., Henderson P., Hoffmann L., Zalewski M. & Komárek J.
title and journal (name, number, pages):
Metadata compilation for the MIDI-CHIP dataset. Freshwater Metadata Journal 37: 1-8
year:
2018
doi (if applicable):
https://doi.org/10.15504/fmj.2018.37
dataset related references:
reference 1:
author(s):
Boutte, C., Mankiewicz-Boczek, J., Komarkova, J., Grubisic, S., Izydorczyk, K., Wautelet, F., Jurczak, T., Zalewski, M. & Wilmotte, A.
title:
Diversity of planktonic cyanobacteria and microcystin occurrence in Polish water bodies investigated using a polyphasic approach. Aquatic Microbial Ecology 51: 223–236.
year:
2008
reference 2:
author(s):
Boutte, C., Grubisic, S., Balthasart, P. & Wilmotte, A.
title:
Testing of primers for the study of cyanobacterial molecular diversity by DGGE. Journal of Microbiological Methods 65(3): 542-550.
year:
2006
reference 3:
author(s):
Boutte, C., Komarkova, J., Grubisic, S., Znachor, P., Bataille, A., Zapomelova, E., Gullukaya, A., Jezberova, J. & Wilmotte, A.
title:
A polyphasic approach to assess the cyanobacterial diversity of summer samples from Czech reservoirs. Algological Studies 117: 177-195.
year:
2005
reference 4:
author(s):
Castiglioni, B., Rizzi, E., Frosini, A., Sivonen, K., Rajaniemi, P., Rantala, A., Mugnai, M.A., Ventura, S., Wilmotte, A., Boutte, C., Grubisic, S., Balthasart, P., Consolandi, C., Bordoni, R., Mezzelani, A., Battaglia, C. & De Bellis, G.
title:
Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria. Applied and Environmental Microbiology 70(12): 7161-7172.
year:
2004
reference 5:
author(s):
Rajaniemi-Wacklin, P., Rantala, A., Mugnai, M.A., Turicchia, S. & Sivonen, K.
title:
Correspondence between phylogeny and morphology of Snowella spp. and Woronichinia naegeliana, cyanobacteria commonly occurring in lakes. Journal of Phycology 42: 226-232.
year:
2006
reference 6:
author(s):
Rantala, A., Fewer, D.P., Hisbergues, M., Rouhiainen, L., Vaitomaa, J., Börner, T. & Sivonen, K.
title:
Phylogenetic evidence for the early evolution of microcystin synthesis. Proceedings of the National Academy of Sciences of the United States of America 101: 568-573.
year:
2004
reference 7:
author(s):
Via-Ordorika, L., Fastner, J., Kurmayer, R., Hisbergues, M., Dittmann, E., Komarek, J., Erhard, M. & Chorus, I.
title:
Distribution of microcystin-producing and non-microcystin-producing Microcystis sp. in European freshwater bodies: detection of microcystins and microcystin genes in individual colonies. Systematic and Applied Microbiology 27: 592-602.
year:
2004
reference 8:
author(s):
Willame, R., Boutte, C., Grubisic, S., Balthasart, P., Wilmotte, A. & Hoffmann, L.
title:
Seasonal cyanobacterial dynamics in a mesoeutrophic reservoir: microscopic counts and DGGE (Denaturing Gradient Gel Electrophoresis). Algological Studies
129: 71-94.
Komárek, J. & Anagnostidis, K. (1998): Cyanoprokaryota 1. Teil: Chroococcales. - In: Ettl, H., Gärtner, G., Heynig, H. & Mollenhauer, D.(eds): Süsswasserflora von Mitteleuropa 19/1, Gustav Fischer, Jena-Stuttgart-Lübeck-Ulm, 548 pp.
